LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-182-5p


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Gene
miRNA
Score
DIANA Links
RP11-403N16.2
hsa-miR-182-5p
1.000
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000448475
Biotype: lincRNA
Gene id: ENSG00000232494
Gene Name: RP11-403N16.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
462-482
0.174
1
7mer
206-233
0.062
1
chr22-38_28785274-29006793.1
hsa-miR-182-5p
1.000
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623644
Biotype: lincRNA
Gene id: ENSG00000279978
Gene Name: chr22-38_28785274-29006793.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
20695-20705
0.018
7
9mer
13552-13579
0.016
0
7mer
35663-35688
0.008
2
8mer
168196-168209
0.008
1
7mer
194629-194643
0.008
1
8mer
2797-2804
0.007
3
7mer
83386-83396
0.006
1
8mer
158808-158833
0.006
Not Conserved
8mer
65383-65395
0.006
1
8mer
264836-264859
0.005
1
7mer
145544-145557
0.005
4
7mer
20732-20751
0.005
10
7mer
152894-152919
0.004
0
7mer
75042-75064
0.004
4
7mer
93761-93773
0.004
3
7mer
105840-105857
0.004
1
8mer
107706-107721
0.004
1
7mer
72003-72023
0.003
Not Conserved
7mer
220972-220982
0.003
0
7mer
91805-91819
0.003
1
8mer
112218-112232
0.003
0
6mer
86896-86916
0.003
5
6mer
151598-151616
0.003
4
7mer
195419-195441
0.003
0
6mer
262949-262960
0.002
3
6mer
57569-57582
0.002
3
6mer
163836-163861
0.002
5
6mer
109241-109257
0.002
3
6mer
186883-186898
0.002
5
6mer
123783-123795
0.002
3
6mer
159476-159486
0.002
1
7mer
111701-111721
0.002
1
7mer
86958-86975
0.002
4
6mer
132105-132125
0.002
7
6mer
193160-193164
0.002
0
6mer
262712-262732
0.002
Not Conserved
6mer
13808-13822
0.002
0
6mer
202224-202246
0.002
0
6mer
8237-8258
0.002
3
6mer
107351-107365
0.002
3
6mer
59056-59081
0.002
4
6mer
66442-66462
0.002
2
7mer
197858-197869
0.002
1
6mer
220469-220495
0.002
3
6mer
110536-110561
0.002
1
6mer
249659-249681
0.002
0
6mer
74596-74622
0.002
7
6mer
222233-222243
0.002
3
6mer
231356-231366
0.002
0
6mer
120500-120522
0.002
6
6mer
56460-56479
0.002
3
6mer
149247-149262
0.002
5
6mer
61855-61878
0.001
0
6mer
215274-215295
0.001
1
7mer
232869-232879
0.001
Not Conserved
6mer
226072-226083
0.001
1
6mer
6942-6956
0.001
2
6mer
100929-100951
0.001
3
6mer
19355-19379
0.001
1
6mer
208135-208153
0.001
0
6mer
34807-34826
0.001
1
6mer
83916-83934
0.001
0
6mer
200311-200336
0.001
1
6mer
107569-107581
0.001
1
6mer
131029-131042
0.001
1
6mer
21204-21219
0.001
0
6mer
11893-11915
0.001
1
6mer
142513-142539
0.001
3
6mer
204869-204879
0.001
0
6mer
226204-226221
0.001
2
6mer
96414-96439
0.001
2
6mer
261583-261599
0.001
0
6mer
150651-150667
0.001
0
6mer
193263-193267
0.001
0
6mer
122806-122825
0.001
0
6mer
185906-185924
0.001
0
6mer
101851-101869
0.001
1
6mer
218211-218230
0.001
1
6mer
83961-83987
0.001
3
6mer
71550-71571
0.001
1
6mer
220599-220620
0.001
1
6mer
222467-222492
0.001
1
6mer
136383-136404
0.001
0
6mer
159584-159605
0.001
Not Conserved
6mer
34818-34839
0.001
0
6mer
122887-122910
0.001
1
XLOC_006126
hsa-miR-182-5p
1.000
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013478
Biotype: transcript isomorph
Gene id: XLOC_006126
Gene Name: XLOC_006126
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
69-85
0.208
0
7mer
116-134
0.006
Not Conserved
RP13-36G14.4
hsa-miR-182-5p
1.000
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000603952
Biotype: sense_intronic
Gene id: ENSG00000270223
Gene Name: RP13-36G14.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
713-740
0.211
1
RP11-75L1.1
hsa-miR-182-5p
1.000
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000541404
Biotype: lincRNA
Gene id: ENSG00000256582
Gene Name: RP11-75L1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
39-63
0.207
0
CTC-513N18.6
hsa-miR-182-5p
1.000
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598131
Biotype: lincRNA
Gene id: ENSG00000269043
Gene Name: CTC-513N18.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
319-343
0.141
1
9mer
233-248
0.061
0
6mer
45-61
0.003
Not Conserved
XLOC_006349
hsa-miR-182-5p
1.000
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013687
Biotype: transcript isomorph
Gene id: XLOC_006349
Gene Name: XLOC_006349
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Breast Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
553-568
0.163
0
7mer
422-444
0.038
0
FAM201A
hsa-miR-182-5p
1.000
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_027294.1
Biotype: lincRNA
Gene id: NR_027294.1 (gene)
Gene Name: FAM201A
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1416-1441
0.195
1
FAM201A
hsa-miR-182-5p
1.000
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000484285
Biotype: antisense
Gene id: ENSG00000204860
Gene Name: FAM201A
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1427-1452
0.193
1
RP3-340N1.2
hsa-miR-182-5p
1.000
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000431027
Biotype: lincRNA
Gene id: ENSG00000227066
Gene Name: RP3-340N1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1206-1223
0.081
1
7mer
2436-2460
0.053
1
7mer
2404-2428
0.018
0
6mer
2461-2483
0.018
1
6mer
590-611
0.011
1
XLOC_013265
hsa-miR-182-5p
1.000
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027227
Biotype: transcript isomorph
Gene id: XLOC_013265
Gene Name: XLOC_013265
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
302-318
0.109
0
7mer
970-997
0.053
0
6mer
417-442
0.013
0
KCNQ1OT1
hsa-miR-182-5p
1.000
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000597346
Biotype: antisense
Gene id: ENSG00000269821
Gene Name: KCNQ1OT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
66967-66981
0.020
2
8mer
76123-76149
0.020
1
8mer
41971-41984
0.009
1
6mer
67-87
0.009
1
8mer
27326-27341
0.007
0
7mer
87107-87130
0.006
2
7mer
57811-57836
0.005
1
7mer
8784-8810
0.005
0
7mer
9628-9651
0.005
0
7mer
41520-41542
0.005
1
7mer
68187-68208
0.005
1
7mer
15740-15761
0.004
1
7mer
66027-66049
0.004
2
7mer
63237-63263
0.003
0
7mer
75665-75682
0.003
2
6mer
46860-46878
0.003
7
6mer
45122-45143
0.003
4
6mer
69824-69847
0.002
1
7mer
76776-76801
0.002
1
6mer
18069-18090
0.002
1
6mer
26879-26899
0.002
0
6mer
86628-86641
0.002
1
6mer
52826-52847
0.002
1
7mer
15119-15142
0.002
0
6mer
7449-7464
0.002
1
6mer
61469-61491
0.002
1
6mer
13585-13595
0.002
1
6mer
26634-26650
0.002
0
6mer
58306-58333
0.002
2
6mer
5789-5809
0.002
1
6mer
42409-42430
0.002
0
6mer
13000-13020
0.002
0
6mer
62602-62623
0.002
1
6mer
43082-43108
0.002
2
6mer
30115-30129
0.002
0
6mer
27644-27654
0.002
0
6mer
11316-11334
0.001
0
6mer
25317-25338
0.001
1
6mer
68874-68884
0.001
2
6mer
39603-39627
0.001
0
6mer
24051-24070
0.001
0
6mer
14645-14662
0.001
1
6mer
83591-83605
0.001
1
6mer
42131-42141
0.001
1
6mer
33031-33046
0.001
Not Conserved
6mer
54854-54866
0.001
1
6mer
57307-57330
0.001
1
6mer
55716-55735
0.001
1
6mer
37356-37376
0.001
0
6mer
9899-9919
0.001
1
6mer
27310-27332
0.001
0
RP11-212D3.4
hsa-miR-182-5p
1.000
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000413763
Biotype: lincRNA
Gene id: ENSG00000226854
Gene Name: RP11-212D3.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
914-937
0.154
0
RP11-711K1.8
hsa-miR-182-5p
1.000
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000612592
Biotype: lincRNA
Gene id: ENSG00000275119
Gene Name: RP11-711K1.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
205-228
0.148
0
AC068831.16
hsa-miR-182-5p
1.000
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000620171
Biotype: lincRNA
Gene id: ENSG00000278514
Gene Name: AC068831.16
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
192-210
0.147
1
RP1-101G11.3
hsa-miR-182-5p
1.000
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624442
Biotype: lincRNA
Gene id: ENSG00000280356
Gene Name: RP1-101G11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
174-201
0.114
7
7mer
807-833
0.008
1
8mer
9624-9641
0.008
1
7mer
996-1017
0.005
2
6mer
5594-5619
0.004
8
6mer
2137-2157
0.002
1
6mer
949-976
0.002
1
6mer
8029-8054
0.002
1
RP11-92B11.3
hsa-miR-182-5p
1.000
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000578710
Biotype: antisense
Gene id: ENSG00000264673
Gene Name: RP11-92B11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
265-291
0.139
0
6mer
23-45
0.003
Not Conserved
MIR663AHG
hsa-miR-182-5p
0.999
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000593517
Biotype: retained_intron
Gene id: ENSG00000227195
Gene Name: MIR663AHG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Lung Normal/Primary
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
495-514
0.131
0
XLOC_011366
hsa-miR-182-5p
0.999
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023528
Biotype: transcript isomorph
Gene id: XLOC_011366
Gene Name: XLOC_011366
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
36-57
0.130
13
XLOC_000789
hsa-miR-182-5p
0.999
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001460
Biotype: transcript isomorph
Gene id: XLOC_000789
Gene Name: XLOC_000789
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
259-280
0.113
4
7mer
366-383
0.012
1
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